PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_4450V3.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 195aa    MW: 22382.7 Da    PI: 4.8523
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_4450V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.81.9e-54231271102
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql +fw++q   +e+++dfk h+lPlarikki+k+dedvkmi+aeaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr dif
  Pp3c26_4450V3.5.p  23 QLSQFWQQQmqeMEQVNDFKTHQLPLARIKKIMKSDEDVKMIAAEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDIF 114
                        7999***998889******************************************************************************* PP

              NF-YC  90 dflvdivprdelk 102
                        dflvdivprdelk
  Pp3c26_4450V3.5.p 115 DFLVDIVPRDELK 127
                        **********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-3213117IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.5E-3736109IPR009072Histone-fold
PfamPF008082.3E-2145108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MMPQLGDQQM QPQLHYQQIQ KQQLSQFWQQ QMQEMEQVND FKTHQLPLAR IKKIMKSDED  60
VKMIAAEAPV LFSKACEMFI LELTLRSWIH TEENKRRTLQ RNDIAGAITR GDIFDFLVDI  120
VPRDELKEED LGVPWTGVPG DGSVPYGGIF YPPMAGQQMH HSMGAPEMMV GQPPNPQMMY  180
QPPQTAFVPE QQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C1e-451712312119HapE
4g91_C1e-451712312119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.41650.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.16e-70PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.16e-70PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.16e-70PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.16e-70PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.16e-70PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP06e-66NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A0C9QSE55e-68A0A0C9QSE5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11948_1274 transcribed RNA sequence
STRINGPP1S159_32V6.21e-141(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-58nuclear factor Y, subunit C1